Phenotypic and Genotypic Characterization of Sheep Breeds in Diverse Habitats of Baluchistan Province through the Analysis of the vertnin Gene
DOI:
https://doi.org/10.53560/PPASB(61-1)1042Keywords:
Vertnin gene, Genotype, Phenotype, Sheep Breeds, Phylogeny, BalochistanAbstract
This study was conducted to identify the vertnin gene in four different sheep breeds of Balochistan by studying their genetic characteristics and analyzing molecular markers. For this purpose, four different sheep breeds, Balochi, Rakhshani, Harnai, and Bibrik, were selected. A total of 10 animals from each breed were chosen to study the impact of breed and the vertnin gene on carcass features. The selection of animals was based on their phenotypic characteristics such as age and teeth. Blood samples of 10 ml were collected and transported to the Laboratory of Molecular Genetics at the Faculty of Veterinary and Animal Sciences, LUAWMS Uthal, Balochistan. Genomic DNA (gDNA) extraction was carried out using a modified inorganic method. The results showed that Balochi had a change in amino acid cytosine (C) > into thymine (T) mutation, Rakhshani had a change in guanine (G) > into adenine (A) mutation, Bibrik had a change in adenine (A) > into cytosine (C) mutation, and Harnai had a change in thymine (T) > into cytosine (C) mutation. The maximum divergence was 0.15715 bp in relation to the comparison in all studied sheep breeds. The phylogenetic results showed that the Balochi breed has 95–97% similarities with the other breeds when sequences were compared. The results revealed that the gel-electrophoresis bands of the Balochi breed were slightly higher, respectively. It was concluded that the vertnin gene exists in different breeds of sheep and might show a broad range of differences, even with similar DNA sequences. However, the purity based on the vertnin gene is at high risk, as a notable difference was found between the Balochi and Harnai sheep.
References
L. Zhang, X. Liu, J. Liang, H. Yan, K. Zhao, N. Li, L. Pu, H. Shi, Y. Zhang, L. Wang, and L. Wang. Quantitative trait loci for the number of vertebrae on Sus scrofa chromosomes 1 and 7 independently influence the numbers of thoracic and lumbar vertebrae in pigs. Journal of Integrative Agriculture 14(10): 2027-2033 (2015).
Z. Zhang, Y. Sun, W. Du, S. He, M. Liu, and C. Tian. Effects of vertebral number variations on carcass traits and genotyping of Vertnin candidate gene in Kazakh sheep. Asian-Australasian Journal of Animal Sciences 30(9): 1234-1238 (2017).
R.R. Kaleri, H.A. Kaleri, R.A Mangi, D.K. Bhuptani, S. Noor, Z. Lanjar, H.A. Kolachi, A.W. Solangi, and S. Dari. Study on the evaluation of some economic traits of Rakhshani and Harnai sheep breeds of Baluchistan, Pakistan. Pakistan Journal of Agricultural Research 36(2): 124-129 (2023).
M. Afzal, and A.N. Naqvi. Livestock resources of Pakistan: present status and future trends. Science Vision 9(1-4): Article No. 22 (2004).
R.R. Kaleri, H.A. Kaleri, A.N. Khosa, R.A. Mangi, G.M. Solangi, M.A. Gopang, and M. Yaqub. Effect of animal breed on the different parts of carcass traits of various sheep breeds of Baluchistan. Pure and Applied Biology 12(2): 874-879 (2023).
SMEDA. Pre-Feasibility Study on Semi Intensive Sheep Farming. Small and Medium Enterprise Development Authority, Government of Pakistan, Lahore (2011).
http://amis.pk/files/PrefeasibilityStudies/semi_intensive_sheep_farm.
N. Borchers, N. Reinsch, and E. Kalm. The number of ribs and vertebrae in a Pietrain cross: variation, heritability and effects on performance traits. Journal of Animal Breeding and Genetics 121(6): 392-403 (2004).
C.L. Donaldson, N.R. Lambe, C.A. Maltin, S. Knott, and L. Bunger. Between-and within-breed variations of spine characteristics in sheep. Journal of Animal Science 91(2): 995-1004 (2013).
D.A. Ibrahim, K.S. Myung, and D.L. Skaggs. Ten percent of patients with adolescent idiopathic scoliosis have variations in the number of thoracic or lumbar vertebrae. The Journal of Joint and Bone Surgery 95(9): 828-833 (2013).
G. Yang, J. Ren, Z. Zhang, and L. Huang. Genetic evidence for the introgression of Western NR6A1 haplotype into Chinese Licha breed associated with increased vertebral number. Animal Genetics 40(2): 247-250 (2009).
J. Yang L. Huang, and M. Yang. Possible introgression of the vertnin mutation increasing vertebral number, carcass length and teat number from Chinese pigs into European pigs. Scientific Report 6(1): 9240 (2016).
M.S. Zardari, H. A. Kaleri, R. R. Kaleri, A. Kaleri, M.A. Jalbani, A.H. Kaleri, and F. Ashraf. Effect of breed on carcass traits of Kundhi and Nili Ravi buffalo. Pure and Applied Biology 6(1): 267-271 (2017).
M.S. Khan, M.A. Ahmad, S. Sohail, and M. Sultan. Genetic resources and diversity in Pakistani sheep. International Journal of Agriculture & Biology 9(6): 941-944 (2007).
M. Vatta, M.J. Ackerman, B. Ye, J.C. Makielski, E.E. Ughanze, E.W. Taylor, and J.A. Towbin. Mutant caveolin-3 induces persistent late sodium current and is associated with long-QT syndrome. Circulation 114(20): 2104-2112 (2006).
M.R. Green, and J. Sambrook (Eds.). Molecular Cloning: A Laboratory Manual. Cold Spring Harbor Laboratory Press, New York, USA (2001).
https://www.cshlpress.com/pdf/sample/2013/MC4/MC4FM.pdf
J.L. Petersen, J.R. Mickelson, A.K. Rendahl, S.J. Valberg, L.S. Andersson, J. Axelsson, and M.E. McCue. Genome-wide analysis reveals selection for important traits in domestic horse breeds. PLoS Genetics 9(1): e1003211 (2013).
D.N. Lori, J.M. MacLeay, and A.S. Turner. Variation in the lumbar spine of the mature ewe: a descriptive study. Veterinary Radiology & Ultrasound 46(2): 105-107 (2005).
Y. Fan, Y. Xing, Z. Zhang, A.H. Ouyang, J. Ouyang, and J. Ren. A further look at porcine chromosome 7 reveals VRTN variants associated with vertebral number in Chinese and Western pigs. PloS One 8(4): e62534 (2013).
H. Nakano, S. Sato, Y. Uemoto, T. Kikuchi, T. Shibata, H. Kadowaki, E. Kobayashi, and K. Suzuki. Effect of VRTN gene polymorphisms on Duroc pig production and carcass traits, and their genetic relationships. Animal Science Journal 86(2): 125-131 (2015).
M. Fiaz, K. Munawar, M. Mushtaq, M. Ahmad, M.A. Chaudhry, M. Aslam, and Nasrullah. Evaluating Varying Calf Milk Replacers for Optimum Growth Performance in Salt Range Lambs. Pakistan Journal of Zoology 49(5): 1925-1928 (2017).
A. Ali, M.E. Babar, S. Mahmood, and M. Imran. First report of GTG-banded nomenclature of Pakistani Lohi sheep (Ovis aries). Turkish Journal of Veterinary & Animal Sciences 35(4): 213-217 (2011).
K. Hirose, S. Mikawa, N. Okumura, G. Noguchi, K. Fukawa, N. Kanaya, A. Mikawa, A. Arakawa, T. Ito, Y. Hayashi, F. Tachibana, and T. Awata. Association of swine vertnin (VRTN) gene with production traits in Duroc pigs improved using a closed nucleus breeding system. Animal Science Journal 84(3): 213-221 (2013).
M. Safdarian, M.J. Zamiri, M. Hashemi, and H. Noorolahi. Relationships of fat-tail dimensions with fat-tail weight and carcass characteristics at different slaughter weights of Torki-Ghashghaii sheep. Meat Science 80(3): 686-689 (2008).
M.E. Babar, Z. Ahmad, A. Nadeem, and M. Yaqoob. Environmental factors affecting birth weight in Lohi sheep. Pakistan Veterinary Journal 24(1): 5-8 (2004).
U. Singh, S. Kumar, I. Ganguly, G.K. Gaur, K. Jagadeesan, S. Kumar, S. Mann, and R. Singh. Identification of genetic polymorphism in two exonic coding region of Leptin gene among indigenous and crossbred cattle. Indian Journal of Animal Research 48(5): 403-407 (2014).
S.R. Searle, F.M. Speed, and G.A. Milliken. Population marginal means in the linear model: an alternative to least squares means. The American Statistician 34(4): 216-221 (1980).
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