Isolation of Monochloroacetic Acid Biodegrading Bacteria from Tigris River
Monochloroacetic acid biodegrading bacteria fromTigris River
DOI:
https://doi.org/10.53560/PPASB(59-4)753Keywords:
Pseudomonas sp SW2, Dehalogenase, Monochloroacetic (MCA), Degradation xenobioticAbstract
Organic compounds containing halogens are widely dispersed throughout the world, resulting in different types of pollution. One of the most common xenobiotics used in agricultural activities is monochloroacetic (MCA) which was Isolated from Iraqi mud in the Tigris River. This bacterial strain was known as SW2. Both standard universal primers Fd1 and rP1 were used with the colony PCR method for bacterial identification before being sent out for sequencing. Basic Local Alignment Search Tool nucleotide sequences and information were analyzed (BLASTn). The phylogenetic tree was constructed using the 16S rRNA sequence to determine their evolutionary distance. The Neighbor-Joining method was used to infer the evolutionary history. The Neighbor-Joining method was used to infer the evolutionary history. There is a 96 percent match between the SW2 bacterium and another type of aerobic GramNegative Bacteria. Strain SW2 (Pseudomonas sp.) was inoculated for two days and yielded colonies that were small, non-spore-forming, and rod-shaped. Growth slowed slightly after 48 hours. The release of chloride ions as a result of the degradation of MCA was seen using a halide ion test. Biochemical tests backed up the choice of the genus’s name as well. As a result, bacteria found in the river are capable of utilizing and degrading the MCA compound. In conclusion, this study confirmed the potential ability of the isolated bacterial strain of utilizing MCA, especially from contaminated environments with the pragmatic application of the bacterial strains to degrade residual herbicide.
References
V.K. Mishra, G. Singh, and R. Shukla, Impact of xenobiotics under a changing climate scenario. In Climate Change and Agricultural Ecosystems. Woodhead Publishing, p 133-151 (2019).
G.R. Chaudhry, and S. Chapalamadugu. Biodegradation of halogenated organic compounds. Microbiological Reviews 55: 59-79 (1991).
G.W. Gribble. The diversity of naturally produced organohalogens. Chemosphere 52: 289-97 (2003).
F. Samara, B.K. Gullett, R.O. Harrison, A. Chu, and G.C. Clark. Determination of relative assay response factors for toxic chlorinated and brominated dioxins/furans using an enzyme immunoassay (EIA) and a chemically-activated luciferase gene expression cell
bioassay (CALUX). Environment International 35: 588-593 (2009).
S. Sinha, P. Chatopadhyay, L. Pan, S. Chatterjee, P. Chanda, D. Bandyopadhaya, K. Das, and S. Sen, Microbial Transformation of Xenobiotics for Environmental Bioremediation. African Journal of Biotechnology. 22: 6016-6027 (2009).
N.H. Jing, and F. Huyop. Dehalogenation of chlorinated aliphatic acid by Rhodococcus sp. Asia-Pacific Journal of Molecular Biology and
Biotechnology 15:147-151 (2007).
C.E. Castro. Environmental dehalogenation: chemistry and mechanism. Reviews of Environmental Contamination and Toxicology 155: 1-67. (1998).
V. Siracusa. Microbial degradation of synthetic biopolymers waste. Polymers 11(6): 1066.) 2019).
J.A. Field, and R. Sierra-Alvarez. Biodegradability of chlorinated solvents and related chlorinated aliphatic compounds. Reviews in Environmental Science and Bio/Technology 3: 185-254 (2004).
A. Adamu, R.A. Wahab, F. Aliyu, A.H. Aminu, M.M. Hamza, and F. Huyop, Haloacid dehalogenases of Rhizobium sp. and related enzymes: Catalytic properties and mechanistic analysis. Process Biochemistry 92:437-446 (2020).
R. Kranz, K.W. Hafer, and E. Richards. Identifying Unknown Bacteria Using Biochemical and Molecular Methods. Washington: Washington University in Saint Louis (2006).
W.A. Hareland, R.L. Crawford, P.J. Chapman, and S. Dagley. Metabolic function and properties of 4-hydroxyphenylacetic acid 1-hydroxylase from Pseudomonas acidovorans. Journal of Bacteriology 121: 272-285 (1975).
W.Y. Wong, and F. Huyop. Molecular Identification and Characterization of Dalapon-2, 2-Dichloropropionate (2, 2DCP)-Degrading
Bacteria from a Rubber Estate Agricultural Area. African Journal of Microbiology Research 6(7), 1520-1526 (2012).
J.G. Bergmann, and J. Sanik. Determination of Trace Amounts of Chlorine in Naphtha. Analytical Chemistry 29: 241-243 (1957).
F. Huyop, N.H. Jing, and R.A. Cooper. Overexpression, purification and analysis of dehalogenase d of rhizobium sp. Canadian Journal
of Pure and Applied Sciences 2: 389-392 (2008).
J. Sambrook and D. W. Russell. Molecular Cloning: A Laboratory Manual, Cold Spring Harbor, NY, Cold Spring Harbor Laboratory (2001).
N. Saitou, and M. Nei. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Molecular Biology and Evolution 4: 406-425 (1987).
K. Tamura, D. Peterson, N. Peterson, G. Stecher, M. Nei, and S. Kumar. MEGA5: Molecular Evolutionary Genetics Analysis Using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods. Molecular Biology and Evolution 28: 2731-2739 (2011).
K.J. Towner, and A. Cockayne. Analysis of Nucleic Acid Profiles. In: Molecular Methods for Microbial Identification and Typingpp. 29-63. K.J. Towner, and A. Cockayne (eds.) Chapman and Hall, London, UK (1993).
M. Drancourt, P. Berger, and D. Raoult. Systematic 16S Rrna Gene Sequencing of Atypical Clinical Isolates Identified 27 New Bacterial Species Associated With Humans. Journal of Clinical Microbiology 42(5), 2197-2202 (2004).
Downloads
Published
How to Cite
Issue
Section
License
Creative Commons Attribution (CC BY). Allows users to: copy the article and distribute; abstracts, create extracts, and other revised versions, adaptations or derivative works of or from an article (such as a translation); include in a collective work (such as an anthology); and text or data mine the article. These uses are permitted even for commercial purposes, provided the user: includes a link to the license; indicates if changes were made; gives appropriate credit to the author(s) (with a link to the formal publication through the relevant DOI); and does not represent the author(s) as endorsing the adaptation of the article or modify the article in such a way as to damage the authors' honor or reputation.